Mass Spectrometry - Quantification
Info
- BioStars: Mass spectrometry
- BioStars: Question: Normalization And Differential Expression Analysis Of Mass Spectrometry Data
- BioStars: Question: absolute protein quantification from mass spectrometry
Software
- Wikipedia: MS/MS peptide quantification
- An Assessment of Software Solutions for the Analysis of Mass Spectrometry Based Quantitative Proteomics Data
- MS-utils
- InfernoRDN can perform various downstream data analysis, data reduction, and data comparison tasks including normalization, hypothesis testing, clustering, and heatmap generation
- Isobar (R package) provides methods for preprocessing, normalization, and report generation for the analysis of Proteomics data generated by Mass spectrometers using isobaric peptide tags, such as iTRAQ and TMT
- MSstats is an R package for statistical relative quantification of proteins and peptides in global, targeted and data-independent proteomic. (Ref.)
Maxquant related
- UNiquant, a program for quantitative proteomics analysis using stable isotope labeling
- Mascot Distiller
- ProtQuant: a tool for the label-free quantification of MudPIT proteomics data
