Thursday, 13 October 2022

GPU-basecalling under MinKNOW

I had terrible problems getting GPU-basecalling running again after the update of MinKNOW in september 2022. After a downgrade von Xubunut 22.04 to 20.04, which didn't give the desired result, I reinstalled Xubuntu version 20.04 from scratch and slowly build up the system again while using following sources for the installation of the GPU-guppy-basecaller.
https://community.nanoporetech.com/docs/prepare/library_prep_protocols/experiment-companion-minknow/v/mke_1013_v1_revcl_11apr2016/installing-gpu-version-of-guppy-with-minknow-for-minion
https://gringer.gitlab.io/presentation-notes/2021/10/08/gpu-calling-in-minknow/
Kudos to where they belong. I'll try to re-collect my steps and post the result on another page.